Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0032Hypothetical protein; Identified by glimmer; putative. (379 aa)    
Predicted Functional Partners:
CPF_0797
FliB family protein; Identified by similarity to SP:Q56106.
  
     0.500
CPF_1521
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183.
  
     0.487
CPF_2384
Conserved hypothetical protein; Identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327.
  
     0.473
CPF_0986
fliB domain protein; Identified by similarity to SP:Q56106.
  
     0.455
CPF_0250
Conserved hypothetical protein; Identified by similarity to GB:AAQ66620.1; match to protein family HMM PF04313.
  
     0.448
CPF_1257
Conserved hypothetical protein; Identified by similarity to PIR:E97022; match to protein family HMM PF06571.
  
     0.442
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
     0.430
CPF_1933
PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888.
  
     0.426
CPF_2563
Hypothetical protein; Identified by glimmer; putative.
  
     0.414
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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