Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bofAsigma-K factor processing regulatory protein BofA; Identified by similarity to GB:BAB79755.1; match to protein family HMM PF07441; match to protein family HMM TIGR02862. (92 aa)    
Predicted Functional Partners:
CPF_0055
Conserved hypothetical protein; Identified by similarity to GB:AAM23356.1.
  
    0.797
yqfC
Sporulation protein YqfC; Identified by similarity to PIR:B97059; match to protein family HMM PF07241; match to protein family HMM TIGR02856.
  
   
 0.613
spoIIM
Stage II sporulation protein M; Identified by similarity to SP:P37873; match to protein family HMM PF01944; match to protein family HMM TIGR02831.
  
   
 0.595
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.
  
   
 0.586
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.575
CPF_2691
Conserved hypothetical protein; Identified by similarity to PIR:G97282.
  
     0.565
CPF_0628
Spore germination protein; Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912.
  
     0.514
CPF_0630
Spore germination protein; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887.
  
     0.500
CPF_0053
Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.499
CPF_2931
Putative lipoprotein.
  
     0.487
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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