STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0107Conserved hypothetical protein; Identified by similarity to GB:CAC39225.1. (83 aa)    
Predicted Functional Partners:
CPF_0106
Putative thiazole biosynthesis protein ThiH; Identified by match to protein family HMM PF04055; match to protein family HMM PF06968.
 
   
 0.899
CPF_0103
Identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231.
 
   
 0.879
CPF_2775
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF06968.
 
  
 0.875
hydA
Iron hydrogenase; Identified by similarity to GB:BAD29951.1; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
 
     0.635
CPF_0214
Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.623
CPF_0808
Putative ferrichrome ABC transporter, permease protein FhuB; Identified by similarity to SP:P49936; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.623
CPF_0809
Putative ferrichrome ABC transporter, permease protein FhuG; Identified by similarity to SP:P49937; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.623
CPF_1297
Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.623
CPF_1425
iron(III) ABC transporter, permease protein; Identified by similarity to SP:Q56992; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.623
CPF_0213
Putative iron chelate uptake ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01497; match to protein family HMM TIGR03659.
  
 
 0.621
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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