Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0107Conserved hypothetical protein; Identified by similarity to GB:CAC39225.1. (83 aa)    
Predicted Functional Partners:
CPF_0106
Putative thiazole biosynthesis protein ThiH; Identified by match to protein family HMM PF04055; match to protein family HMM PF06968.
 
     0.878
CPF_0103
Identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231.
 
    0.832
CPF_2775
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF06968.
 
    0.825
hydA
Iron hydrogenase; Identified by similarity to GB:BAD29951.1; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
 
     0.636
CPF_2900
[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.
 
     0.545
CPF_0552
Conserved hypothetical protein; Identified by similarity to PIR:F72407.
 
  
 0.532
CPF_0270
[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.
  
     0.517
CPF_0213
Putative iron chelate uptake ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01497; match to protein family HMM TIGR03659.
  
 
 0.507
CPF_0807
Iron compound ABC transporter, iron compound-binding protein; Identified by match to protein family HMM PF01497.
  
 
 0.507
CPF_1296
Iron chelate uptake ABC transporter, FeCT family, solute-binding protein; Identified by match to protein family HMM PF01497.
  
 
 0.507
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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