Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CPF_0109 | CPF_0110 | Conserved hypothetical protein; Identified by similarity to GB:BAC14097.1; match to protein family HMM PF07872. | Conserved hypothetical protein; Identified by similarity to GB:AAK76917.1. | 0.408 |
CPF_0110 | CPF_0109 | Conserved hypothetical protein; Identified by similarity to GB:AAK76917.1. | Conserved hypothetical protein; Identified by similarity to GB:BAC14097.1; match to protein family HMM PF07872. | 0.408 |
CPF_0110 | CPF_0593 | Conserved hypothetical protein; Identified by similarity to GB:AAK76917.1. | Conserved domain protein. | 0.539 |
CPF_0110 | CPF_2798 | Conserved hypothetical protein; Identified by similarity to GB:AAK76917.1. | Putative cell division protein FtsL; Identified by match to protein family HMM PF04977. | 0.538 |
CPF_0593 | CPF_0110 | Conserved domain protein. | Conserved hypothetical protein; Identified by similarity to GB:AAK76917.1. | 0.539 |
CPF_2798 | CPF_0110 | Putative cell division protein FtsL; Identified by match to protein family HMM PF04977. | Conserved hypothetical protein; Identified by similarity to GB:AAK76917.1. | 0.538 |