CPF_0116 protein (Clostridium perfringens ATCC 13124)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Knowledge-based Evidence

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textmining

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co-expression

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[Homology]

Score

CPF_0116

Sensor histidine kinase; Identified by match to protein family HMM PF02518. (337 aa)

Predicted Functional Partners:

CPF_0115

0.964

CPF_0119

0.933

CPF_0118

0.897

CPF_0841

0.897

CPF_0836

0.845

drrA

0.616

CPF_0459

0.612

CPF_0117

0.610

CPF_1192

0.550

CPF_1403

0.550

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0115	CPF_0116	CPF_0115	CPF_0116	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	0.964
CPF_0115	CPF_0117	CPF_0115	CPF_0117	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Hypothetical protein; Identified by glimmer; putative.	0.610
CPF_0115	CPF_0118	CPF_0115	CPF_0118	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.599
CPF_0115	CPF_0119	CPF_0115	CPF_0119	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.680
CPF_0115	CPF_0841	CPF_0115	CPF_0841	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	ABC transporter, ATP-binding protein; Identified by similarity to SP:O34697; match to protein family HMM PF00005.	0.601
CPF_0116	CPF_0115	CPF_0116	CPF_0115	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.964
CPF_0116	CPF_0117	CPF_0116	CPF_0117	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	Hypothetical protein; Identified by glimmer; putative.	0.610
CPF_0116	CPF_0118	CPF_0116	CPF_0118	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.897
CPF_0116	CPF_0119	CPF_0116	CPF_0119	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.933
CPF_0116	CPF_0459	CPF_0116	CPF_0459	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.612
CPF_0116	CPF_0836	CPF_0116	CPF_0836	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.845
CPF_0116	CPF_0841	CPF_0116	CPF_0841	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	ABC transporter, ATP-binding protein; Identified by similarity to SP:O34697; match to protein family HMM PF00005.	0.897
CPF_0116	CPF_1192	CPF_0116	CPF_1192	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.550
CPF_0116	CPF_1403	CPF_0116	CPF_1403	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.550
CPF_0116	drrA	CPF_0116	CPF_2674	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.616
CPF_0117	CPF_0115	CPF_0117	CPF_0115	Hypothetical protein; Identified by glimmer; putative.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.610
CPF_0117	CPF_0116	CPF_0117	CPF_0116	Hypothetical protein; Identified by glimmer; putative.	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	0.610
CPF_0118	CPF_0115	CPF_0118	CPF_0115	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.599
CPF_0118	CPF_0116	CPF_0118	CPF_0116	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sensor histidine kinase; Identified by match to protein family HMM PF02518.	0.897
CPF_0118	CPF_0119	CPF_0118	CPF_0119	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.989