CPF_0148 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_0148

Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076. (273 aa)

Predicted Functional Partners:

CPF_0147

0.782

CPF_0771

0.780

CPF_0123

0.775

CPF_0774

0.593

CPF_0149

0.574

CPF_1618

0.415

CPF_0146

0.408

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CPF_0123	CPF_0146	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.565
CPF_0123	CPF_0147	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	0.761
CPF_0123	CPF_0148	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	0.775
CPF_0123	CPF_0771	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.764
CPF_0123	CPF_0774	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Von Willebrand factor type A/Cna B-type domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF05738.	0.682
CPF_0146	CPF_0123	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.565
CPF_0146	CPF_0147	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	0.848
CPF_0146	CPF_0148	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	0.408
CPF_0146	CPF_0771	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.476
CPF_0147	CPF_0123	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.761
CPF_0147	CPF_0146	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.848
CPF_0147	CPF_0148	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	0.782
CPF_0147	CPF_0774	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	Von Willebrand factor type A/Cna B-type domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF05738.	0.505
CPF_0148	CPF_0123	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.775
CPF_0148	CPF_0146	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.408
CPF_0148	CPF_0147	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	Putative surface protein; Identified by similarity to GB:AAO49409.1; match to protein family HMM PF05738.	0.782
CPF_0148	CPF_0149	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	Conserved hypothetical protein; Identified by similarity to GB:AAO36679.1.	0.574
CPF_0148	CPF_0771	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.	0.780
CPF_0148	CPF_0774	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	Von Willebrand factor type A/Cna B-type domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF05738.	0.593
CPF_0148	CPF_1618	Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.	OB-fold nucleic acid binding domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF01336; match to protein family HMM TIGR01167.	0.415