Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0149Conserved hypothetical protein; Identified by similarity to GB:AAO36679.1. (303 aa)    
Predicted Functional Partners:
CPF_0742
Conserved hypothetical protein; Identified by similarity to GB:CAJ70527.1.
  
     0.666
CPF_0148
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
       0.574
CPF_2827
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.512
CPF_0767
Iron-sulfur cluster-binding protein, rieske family; Identified by match to protein family HMM PF00355; match to protein family HMM PF01266.
 
     0.490
CPF_2611
Conserved hypothetical protein; Identified by similarity to GB:AAO36364.1.
  
     0.479
CPF_1841
Hypothetical protein; Identified by glimmer; putative.
  
     0.455
CPF_0630
Spore germination protein; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887.
  
     0.438
CPF_0126
Identified by match to protein family HMM PF03595.
  
     0.404
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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