STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0210Cell wall anchor domain protein; Identified by match to protein family HMM PF05031; match to protein family HMM TIGR01167. (743 aa)    
Predicted Functional Partners:
CPF_0216
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.752
CPF_0213
Putative iron chelate uptake ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01497; match to protein family HMM TIGR03659.
 
  
 0.736
CPF_0217
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.671
CPF_1073
Discoidin domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305.
  
     0.664
CPF_1489
F5/8 type C domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07554; match to protein family HMM PF08305.
  
     0.643
CPF_0214
Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.632
CPF_0219
Conserved hypothetical protein; Identified by similarity to GB:AAO79602.1.
 
     0.632
CPF_0211
Putative iron transporter; Identified by match to protein family HMM PF05031.
      
0.628
CPF_0212
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
     
 0.609
CPF_0215
Iron chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
    0.589
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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