STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0263ABC-2 type transporter, permease protein; Identified by match to protein family HMM PF01061. (270 aa)    
Predicted Functional Partners:
CPF_0264
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.998
CPF_0267
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.998
CPF_0265
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
  
 0.756
CPF_0266
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.750
CPF_0268
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
  
 0.537
CPF_0538
Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
  
  
  0.462
mtfB
Identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534.
 
  
 0.440
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.437
CPF_2350
Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    
 0.429
CPF_2487
Putative mannosyltransferase; Identified by match to protein family HMM PF00534.
 
  
 0.425
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.