Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_0274SagA protein; Identified by similarity to GB:AAF86217.1; match to protein family HMM PF00877. (432 aa)    
Predicted Functional Partners:
CPF_0297
Putative cell division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 0.874
ftsE
Putative cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.819
CPF_1867
Identified by match to protein family HMM PF01551.
  
  
 0.617
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.605
CPF_0275
Conserved hypothetical protein; Identified by similarity to GB:AAM23407.1; match to protein family HMM PF05175.
       0.600
CPF_1467
Putative enterotoxin, EntA; Identified by similarity to GB:AAS44253.1; match to protein family HMM PF00018; match to protein family HMM PF08239.
 
  
 0.579
CPF_1562
Identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF07653; match to protein family HMM PF08239.
 
  
0.571
CPF_1755
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
 
  
 0.571
CPF_0545
Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P00806; match to protein family HMM PF01510.
  
  
 0.537
CPF_0339
Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
  
  
 0.522
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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