STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0285endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF00801; match to protein family HMM PF03644; match to protein family HMM TIGR01167. (1135 aa)    
Predicted Functional Partners:
CPF_2335
Bacterial extracellular solute-binding protein; Identified by similarity to SP:P37966; match to protein family HMM PF01547.
 
     0.762
CPF_2346
Putative membrane protein.
 
     0.762
CPF_2344
DNA-binding response regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
    0.761
CPF_1283
Conserved hypothetical protein.
 
     0.757
CPF_1285
Conserved hypothetical protein; Identified by similarity to PIR:D83749; match to protein family HMM PF01547.
 
     0.753
CPF_1077
Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
 
     0.752
CPF_1466
Putative lipoprotein; Identified by similarity to SP:P37966; match to protein family HMM PF01547.
 
     0.746
CPF_2337
Putative alpha-mannosidase; Identified by similarity to GB:BAB40444.2; match to protein family HMM PF01074; match to protein family HMM PF07748; match to protein family HMM PF09261.
 
  
 0.677
CPF_2339
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.675
CPF_0428
Conserved hypothetical protein; Identified by similarity to PIR:AG1527; match to protein family HMM PF06824.
 
     0.668
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.