Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0371Conserved hypothetical protein; Identified by similarity to GB:AAN83046.1. (356 aa)    
Predicted Functional Partners:
CPF_0308
Electron transfer flavoprotein, beta subunit/FixA family protein; Identified by match to protein family HMM PF01012.
  
 
 0.686
CPF_2583
Electron transfer flavoprotein, beta subunit/FixA family protein; Identified by match to protein family HMM PF01012.
  
 
 0.686
CPF_0767
Iron-sulfur cluster-binding protein, rieske family; Identified by match to protein family HMM PF00355; match to protein family HMM PF01266.
 
  
 0.614
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
 
   
 0.573
CPF_0309
Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
  
 
 0.540
CPF_2582
Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
  
 
 0.540
CPF_0372
Identified by match to protein family HMM PF01522.
  
    0.437
CPF_0233
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040; Belongs to the UbiA prenyltransferase family.
  
  
 0.410
ispA
Geranyltranstransferase; Identified by similarity to SP:Q08291; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 
 0.403
CPF_1810
Identified by similarity to SP:P22871; match to protein family HMM TIGR02734.
  
  
 0.401
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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