STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)    
Predicted Functional Partners:
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01832.
 
 
 0.995
kduI-2
4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 
0.942
CPF_0400
Putative glucuronyl hydrolase; Identified by similarity to GB:BAA84216.1; match to protein family HMM PF07470.
 
   
 0.860
CPF_0397
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
  
 0.843
CPF_0398
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
 
  
 0.838
CPF_0394
Polysaccharide lyase, family 8; Identified by match to protein family HMM PF00746; match to protein family HMM PF02278; match to protein family HMM PF08124; match to protein family HMM TIGR01167.
       0.539
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.493
CPF_0402
PTS system, mannose/fructose/sorbose family, IIC component; Identified by match to protein family HMM PF03609.
 
     0.469
CPF_0404
PTS system, mannose/fructose/sorbose family, IIA component; Identified by match to protein family HMM PF03610.
 
     0.428
CPF_0401
PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03830.
       0.426
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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