Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0401PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03830. (162 aa)    
Predicted Functional Partners:
CPF_0402
PTS system, mannose/fructose/sorbose family, IIC component; Identified by match to protein family HMM PF03609.
 
 0.996
CPF_0403
PTS system, mannose/fructose/sorbose family, IID component; Identified by match to protein family HMM PF03613.
 
 0.996
CPF_0404
PTS system, mannose/fructose/sorbose family, IIA component; Identified by match to protein family HMM PF03610.
 
 
 0.993
CPF_0820
PTS system, mannose/fructose/sorbose family, IID component; Identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828.
 
 
 0.927
CPF_1923
Phosphocarrier, HPr family; Identified by similarity to SP:P07515; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
 0.924
CPF_1714
PTS system, IID component; Identified by similarity to SP:P08188; match to protein family HMM PF03613.
 
 
 0.916
CPF_1715
PTS system, IIC component; Identified by similarity to SP:P08187; match to protein family HMM PF03609.
 
 
 0.915
CPF_2965
PTS system, IIA component; Identified by match to protein family HMM PF03610.
 
  
 0.915
CPF_2966
PTS system, IID component; Identified by similarity to SP:P08188; match to protein family HMM PF03613.
 
 
 0.915
CPF_2967
PTS system, IIC component; Identified by similarity to SP:P08187; match to protein family HMM PF03609.
 
 
 0.915
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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