CPF_0425 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_0425

Identified by similarity to SP:P46907; match to protein family HMM PF07690. (428 aa)

Predicted Functional Partners:

hemD

0.655

CPF_0424

0.529

CPF_1076

0.489

CPF_0956

0.463

CPF_1584

0.463

CPF_0818

0.414

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0424	CPF_0425	CPF_0424	CPF_0425	Putative glycerophosphoryl diester phosphodiesterase; Identified by similarity to SP:P37965; match to protein family HMM PF03009.	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	0.529
CPF_0425	CPF_0424	CPF_0425	CPF_0424	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	Putative glycerophosphoryl diester phosphodiesterase; Identified by similarity to SP:P37965; match to protein family HMM PF03009.	0.529
CPF_0425	CPF_0818	CPF_0425	CPF_0818	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824.	0.414
CPF_0425	CPF_0956	CPF_0425	CPF_0956	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	Putative phage major capsid protein; Identified by similarity to GB:AAA56848.1.	0.463
CPF_0425	CPF_1076	CPF_0425	CPF_1076	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512.	0.489
CPF_0425	CPF_1584	CPF_0425	CPF_1584	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.	0.463
CPF_0425	hemD	CPF_0425	CPF_1687	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	uroporphyrinogen-III methyltransferase/synthase; Identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.	0.655
CPF_0818	CPF_0425	CPF_0818	CPF_0425	PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824.	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	0.414
CPF_0956	CPF_0425	CPF_0956	CPF_0425	Putative phage major capsid protein; Identified by similarity to GB:AAA56848.1.	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	0.463
CPF_1076	CPF_0425	CPF_1076	CPF_0425	[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512.	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	0.489
CPF_1076	hemD	CPF_1076	CPF_1687	[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512.	uroporphyrinogen-III methyltransferase/synthase; Identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.	0.463
CPF_1584	CPF_0425	CPF_1584	CPF_0425	Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	0.463
hemD	CPF_0425	CPF_1687	CPF_0425	uroporphyrinogen-III methyltransferase/synthase; Identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.	Identified by similarity to SP:P46907; match to protein family HMM PF07690.	0.655
hemD	CPF_1076	CPF_1687	CPF_1076	uroporphyrinogen-III methyltransferase/synthase; Identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.	[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512.	0.463