STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0438Conserved hypothetical protein; Identified by similarity to GB:AAT04397.1. (138 aa)    
Predicted Functional Partners:
CPF_0437
Conserved hypothetical protein; Identified by similarity to PIR:G97099.
       0.825
CPF_0742
Conserved hypothetical protein; Identified by similarity to GB:CAJ70527.1.
  
     0.667
CPF_0981
Conserved hypothetical protein; Identified by similarity to GB:CAA15293.1.
 
    0.543
CPF_2364
Conserved hypothetical protein; Identified by similarity to GB:AAO36386.1; match to protein family HMM PF07550.
  
    0.509
CPF_1226
Putative membrane protein.
  
     0.506
CPF_0593
Conserved domain protein.
  
     0.475
CPF_0146
Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.
  
    0.465
CPF_2367
Major facilitator family transporter; Identified by match to protein family HMM PF07690.
  
     0.435
CPF_1719
Conserved hypothetical protein; Identified by similarity to GB:AAK76779.1; match to protein family HMM PF09719; match to protein family HMM TIGR01909.
  
    0.426
CPF_1182
Putative membrane protein; Identified by similarity to SP:P58769; match to protein family HMM PF01794.
  
     0.421
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.