STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0447Putative membrane protein; Identified by similarity to GB:AAP28153.1. (208 aa)    
Predicted Functional Partners:
CPF_0446
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.783
CPF_0448
Putative membrane protein; Identified by similarity to GB:AAS12417.1.
       0.783
CPF_0445
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.670
CPF_0449
Putative lactoylglutathione lyase; Identified by match to protein family HMM PF00903.
       0.507
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.