STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0465Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM TIGR01007. (217 aa)    
Predicted Functional Partners:
CPF_0464
Capsule chain length determinant protein; Identified by match to protein family HMM PF02706.
 
 0.991
CPF_0918
Capsule chain length determinant protein; Identified by match to protein family HMM PF02706.
 
 0.956
CPF_0243
Putative protein-tyrosine-phosphatase; Identified by similarity to SP:Q54518; match to protein family HMM PF02811.
  
 0.915
CPF_0466
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02397.
 
  
 0.734
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.612
CPF_0595
Bacterial sugar transferase family protein; Identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397.
 
  
 0.495
CPF_0910
Capsular polysaccharide biosynthesis protein; Identified by similarity to SP:P39853; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.492
CPF_0912
Bacterial sugar transferase family protein; Identified by similarity to GB:AAG17415.1; match to protein family HMM PF02397.
 
  
 0.453
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.453
CPF_1991
Protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714.
    
 
 0.401
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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