Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_0472Putative capK protein; Identified by similarity to SP:P39860. (459 aa)    
Predicted Functional Partners:
CPF_0471
Heparinase II/III-like protein; Identified by similarity to GB:BAC93122.1; match to protein family HMM PF07940.
 
     0.841
CPF_0470
Bacterial transferase hexpeptide repeat protein.
       0.730
CPF_0474
Putative polysaccharide transporter protein; Identified by match to protein family HMM PF01943.
  
    0.707
CPF_0473
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
  
    0.705
CPF_0475
Hypothetical protein; Identified by glimmer; putative.
       0.701
CPF_0476
Putative membrane protein.
       0.682
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.641
CPF_0477
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
 
    0.574
adhE
Aldehyde-alcohol dehydrogenase; Identified by similarity to SP:P33744; match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.557
CPF_0895
Ethanolamine utilization protein; Identified by similarity to GB:AAO36662.1; match to protein family HMM PF00171; match to protein family HMM TIGR02518.
  
 
 0.518
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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