STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0475Hypothetical protein; Identified by glimmer; putative. (405 aa)    
Predicted Functional Partners:
CPF_0474
Putative polysaccharide transporter protein; Identified by match to protein family HMM PF01943.
       0.797
CPF_0473
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
       0.791
CPF_0476
Putative membrane protein.
       0.773
CPF_0472
Putative capK protein; Identified by similarity to SP:P39860.
       0.706
CPF_0471
Heparinase II/III-like protein; Identified by similarity to GB:BAC93122.1; match to protein family HMM PF07940.
       0.683
CPF_0470
Bacterial transferase hexpeptide repeat protein.
       0.636
CPF_0477
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
       0.569
CPF_0478
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
       0.524
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.511
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.