STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0490Cell wall binding repeat domain protein; Identified by match to protein family HMM PF01473. (1557 aa)    
Predicted Functional Partners:
CPF_1755
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
  
  
 0.534
CPF_2842
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
  
  
 0.534
CPF_0605
Identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; match to protein family HMM PF01832.
  
   
0.446
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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