CPF_0538 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_0538

Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. (517 aa)

Predicted Functional Partners:

CPF_0537

0.999

nifJ

0.632

CPF_2350

0.615

CPF_1145

0.591

CPF_2589

0.570

CPF_1615

0.556

CPF_1478

0.541

potA

0.541

CPF_0791

0.513

CPF_0435

0.512

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0435	CPF_0538	CPF_0435	CPF_0538	Putative lipoprotein; Identified by match to protein family HMM PF07656.	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	0.512
CPF_0537	CPF_0538	CPF_0537	CPF_0538	Glycine betaine/L-proline transport, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	0.999
CPF_0537	CPF_1615	CPF_0537	CPF_1615	Glycine betaine/L-proline transport, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.	TrkA domain protein; Identified by match to protein family HMM PF02080.	0.404
CPF_0537	CPF_2589	CPF_0537	CPF_2589	Glycine betaine/L-proline transport, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF02080.	0.422
CPF_0538	CPF_0435	CPF_0538	CPF_0435	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Putative lipoprotein; Identified by match to protein family HMM PF07656.	0.512
CPF_0538	CPF_0537	CPF_0538	CPF_0537	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Glycine betaine/L-proline transport, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.	0.999
CPF_0538	CPF_0791	CPF_0538	CPF_0791	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.513
CPF_0538	CPF_1145	CPF_0538	CPF_1145	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.	0.591
CPF_0538	CPF_1478	CPF_0538	CPF_1478	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.541
CPF_0538	CPF_1615	CPF_0538	CPF_1615	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	TrkA domain protein; Identified by match to protein family HMM PF02080.	0.556
CPF_0538	CPF_2350	CPF_0538	CPF_2350	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.615
CPF_0538	CPF_2589	CPF_0538	CPF_2589	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF02080.	0.570
CPF_0538	nifJ	CPF_0538	CPF_2318	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.632
CPF_0538	potA	CPF_0538	CPF_2223	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.541
CPF_0791	CPF_0538	CPF_0791	CPF_0538	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	0.513
CPF_1145	CPF_0538	CPF_1145	CPF_0538	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	0.591
CPF_1145	nifJ	CPF_1145	CPF_2318	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.	Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.595
CPF_1478	CPF_0538	CPF_1478	CPF_0538	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.	0.541
CPF_1478	CPF_2350	CPF_1478	CPF_2350	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.445
CPF_1478	potA	CPF_1478	CPF_2223	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.406

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About