CPF_0558 protein (Clostridium perfringens ATCC 13124)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CPF_0558

ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (293 aa)

Predicted Functional Partners:

CPF_0557

0.997

CPF_0556

0.994

CPF_2654

0.968

CPF_1114

0.932

CPF_2651

0.932

CPF_1113

0.869

CPF_2339

0.788

CPF_2652

0.599

galT

0.582

CPF_0553

0.557

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0553	CPF_0556	CPF_0553	CPF_0556	Conserved hypothetical protein TIGR02336; Identified by similarity to GB:AAN25428.1; match to protein family HMM PF09508; match to protein family HMM TIGR02336.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.864
CPF_0553	CPF_0557	CPF_0553	CPF_0557	Conserved hypothetical protein TIGR02336; Identified by similarity to GB:AAN25428.1; match to protein family HMM PF09508; match to protein family HMM TIGR02336.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.636
CPF_0553	CPF_0558	CPF_0553	CPF_0558	Conserved hypothetical protein TIGR02336; Identified by similarity to GB:AAN25428.1; match to protein family HMM PF09508; match to protein family HMM TIGR02336.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.557
CPF_0556	CPF_0553	CPF_0556	CPF_0553	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	Conserved hypothetical protein TIGR02336; Identified by similarity to GB:AAN25428.1; match to protein family HMM PF09508; match to protein family HMM TIGR02336.	0.864
CPF_0556	CPF_0557	CPF_0556	CPF_0557	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.988
CPF_0556	CPF_0558	CPF_0556	CPF_0558	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.994
CPF_0556	CPF_1114	CPF_0556	CPF_1114	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	0.702
CPF_0556	CPF_2339	CPF_0556	CPF_2339	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.418
CPF_0556	CPF_2651	CPF_0556	CPF_2651	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	Putative maltose/maltodextrin ABC transporter, permease protein; Identified by similarity to SP:P02916; match to protein family HMM PF00528.	0.711
CPF_0556	CPF_2652	CPF_0556	CPF_2652	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	Putative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein; Identified by similarity to SP:P19576; match to protein family HMM PF01547.	0.555
CPF_0556	CPF_2654	CPF_0556	CPF_2654	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.813
CPF_0557	CPF_0553	CPF_0557	CPF_0553	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved hypothetical protein TIGR02336; Identified by similarity to GB:AAN25428.1; match to protein family HMM PF09508; match to protein family HMM TIGR02336.	0.636
CPF_0557	CPF_0556	CPF_0557	CPF_0556	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.988
CPF_0557	CPF_0558	CPF_0557	CPF_0558	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.997
CPF_0557	CPF_1113	CPF_0557	CPF_1113	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Sugar ABC transporter, sugar-binding protein; Identified by match to protein family HMM PF01547.	0.879
CPF_0557	CPF_2652	CPF_0557	CPF_2652	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein; Identified by similarity to SP:P19576; match to protein family HMM PF01547.	0.909
CPF_0557	CPF_2654	CPF_0557	CPF_2654	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.980
CPF_0558	CPF_0553	CPF_0558	CPF_0553	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved hypothetical protein TIGR02336; Identified by similarity to GB:AAN25428.1; match to protein family HMM PF09508; match to protein family HMM TIGR02336.	0.557
CPF_0558	CPF_0556	CPF_0558	CPF_0556	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.994
CPF_0558	CPF_0557	CPF_0558	CPF_0557	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.997