Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_0595Bacterial sugar transferase family protein; Identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397. (220 aa)    
Predicted Functional Partners:
CPF_2125
Glycosyl transferase, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
    
 0.817
CPF_0596
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.787
rfbA-2
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.744
CPF_0604
Polysaccharide biosynthesis protein; Identified by similarity to GB:AAK68914.1; match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023.
 
  
 0.672
CPF_0594
HAD-superfamily hydrolase, subfamily IIB; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.
  
    0.649
rfbD-2
dTDP-4-dehydrorhamnose reductase; Identified by similarity to GB:BAA21509.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214.
  
  
 0.605
CPF_0915
Putative polysaccharide polymerase protein; Identified by similarity to GB:AAM94575.1.
  
  
 0.596
CPF_0601
Putative membrane protein.
  
  
 0.587
CPF_0911
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GB:AAD45657.1; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.577
rfbC-2
dTDP-4-dehydrorhamnose 3,5-epimerase; Identified by similarity to SP:P37780; match to protein family HMM PF00908; match to protein family HMM TIGR01221.
  
  
 0.574
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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