STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0604Polysaccharide biosynthesis protein; Identified by similarity to GB:AAK68914.1; match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023. (483 aa)    
Predicted Functional Partners:
CPF_0603
Conserved domain protein; Identified by similarity to GB:BAA32000.1.
 
   
 0.817
rfbB-2
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P55295; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.770
rfbC-2
dTDP-4-dehydrorhamnose 3,5-epimerase; Identified by similarity to SP:P37780; match to protein family HMM PF00908; match to protein family HMM TIGR01221.
  
  
 0.741
CPF_0605
Identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; match to protein family HMM PF01832.
       0.717
CPF_0601
Putative membrane protein.
  
  
 0.707
CPF_0608
Transcriptional regulator, MarR family/choline/ethanolamine kinase; Identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636.
 
  
 0.686
rfbA-2
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.663
CPF_0595
Bacterial sugar transferase family protein; Identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397.
 
  
 0.633
CPF_0466
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02397.
 
  
 0.596
rfbD-2
dTDP-4-dehydrorhamnose reductase; Identified by similarity to GB:BAA21509.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214.
  
  
 0.582
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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