Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0605Identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473; match to protein family HMM PF01832. (807 aa)    
Predicted Functional Partners:
CPF_0604
Polysaccharide biosynthesis protein; Identified by similarity to GB:AAK68914.1; match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023.
       0.705
CPF_0603
Conserved domain protein; Identified by similarity to GB:BAA32000.1.
       0.700
CPF_1437
3D domain protein; Identified by match to protein family HMM PF06725.
   
  
 0.607
CPF_0606
Cell wall binding repeat protein/zinc carboxypeptidase family; Identified by match to protein family HMM PF00246; match to protein family HMM PF01473.
 
   
0.599
CPF_1755
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
   
  
 0.574
CPF_2842
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
   
  
 0.574
CPF_0460
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.563
CPF_0602
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
     
 0.546
CPF_2479
lysM domain protein; Identified by match to protein family HMM PF01476.
  
  
 0.515
CPF_0601
Putative membrane protein.
       0.489
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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