Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CPF_0608Transcriptional regulator, MarR family/choline/ethanolamine kinase; Identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636. (622 aa)    
Predicted Functional Partners:
CPF_0609
Putative membrane protein; Identified by match to protein family HMM PF00892.
 
  
 0.936
CPF_0610
Identified by match to protein family HMM PF00483.
   
 0.934
CPF_0917
licD family protein; Identified by similarity to GB:AAD37094.1; match to protein family HMM PF04991.
 
   
 0.755
CPF_0604
Polysaccharide biosynthesis protein; Identified by similarity to GB:AAK68914.1; match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023.
 
  
 0.698
CPF_0603
Conserved domain protein; Identified by similarity to GB:BAA32000.1.
 
   
 0.695
CPF_0607
Cell wall binding repeat protein; Identified by similarity to PIR:A41971; match to protein family HMM PF01473.
 
     0.622
CPF_0606
Cell wall binding repeat protein/zinc carboxypeptidase family; Identified by match to protein family HMM PF00246; match to protein family HMM PF01473.
 
     0.591
CPF_2245
Conserved hypothetical protein; Identified by similarity to PIR:H97195.
  
 0.589
CPF_0550
Cell wall binding repeat domain protein; Identified by match to protein family HMM PF01473.
  
     0.575
CPF_0611
Cell wall binding repeat protein; Identified by similarity to GB:AAF73795.1; match to protein family HMM PF01473.
  
     0.556
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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