STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0643Conserved hypothetical protein; Identified by similarity to GB:AAL23202.1. (354 aa)    
Predicted Functional Partners:
CPF_0644
Putative PTS system, ascorbate-specific IIA component SgaA; Identified by match to protein family HMM PF00359.
 
  
 0.990
CPF_0645
Putative PTS system, ascorbate-specific IIC component SgaT; Identified by similarity to SP:P39301; match to protein family HMM PF04215.
 
 
 0.987
CPF_0646
Putative PTS system, ascorbate-specific IIB component SgaB; Identified by similarity to SP:P39302; match to protein family HMM PF02302.
 
 
 0.984
CPF_0503
PTS system, L-Ascorbate family, IIC component; Identified by match to protein family HMM PF04215.
 
 
 0.949
CPF_0501
PTS system, L-Ascorbate family, IIA component; Identified by match to protein family HMM PF00359.
 
  
 0.927
CPF_0502
PTS system, lactose/cellobiose-specific IIB component; Identified by match to protein family HMM PF02302.
  
 
 0.909
CPF_0647
Conserved hypothetical protein; Identified by similarity to GB:AAN00670.1.
 
     0.829
CPF_0649
Putative hexulose-6-phosphate isomerase; Identified by similarity to SP:P39305; match to protein family HMM PF01261; match to protein family HMM TIGR00542.
 
   
 0.826
araD
L-ribulose-5-phosphate 4-epimerase; Identified by similarity to SP:P39306; match to protein family HMM PF00596; match to protein family HMM TIGR00760.
 
   
 0.565
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.