Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_0644Putative PTS system, ascorbate-specific IIA component SgaA; Identified by match to protein family HMM PF00359. (144 aa)    
Predicted Functional Partners:
CPF_0643
Conserved hypothetical protein; Identified by similarity to GB:AAL23202.1.
 
  
 0.990
CPF_0645
Putative PTS system, ascorbate-specific IIC component SgaT; Identified by similarity to SP:P39301; match to protein family HMM PF04215.
 
 
 0.989
CPF_0646
Putative PTS system, ascorbate-specific IIB component SgaB; Identified by similarity to SP:P39302; match to protein family HMM PF02302.
 
 
 0.988
CPF_0502
PTS system, lactose/cellobiose-specific IIB component; Identified by match to protein family HMM PF02302.
 
 
 0.982
CPF_0503
PTS system, L-Ascorbate family, IIC component; Identified by match to protein family HMM PF04215.
 
 
 0.982
CPF_0501
PTS system, L-Ascorbate family, IIA component; Identified by match to protein family HMM PF00359.
  
  
 
0.921
CPF_1923
Phosphocarrier, HPr family; Identified by similarity to SP:P07515; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
 
 0.918
CPF_0649
Putative hexulose-6-phosphate isomerase; Identified by similarity to SP:P39305; match to protein family HMM PF01261; match to protein family HMM TIGR00542.
 
   
 0.789
CPF_0647
Conserved hypothetical protein; Identified by similarity to GB:AAN00670.1.
 
     0.680
fruA
PTS system, fructose-specific, IIABC component; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
 
  
 0.674
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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