STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0652F5/8 type C domain protein; Identified by match to protein family HMM PF00754. (436 aa)    
Predicted Functional Partners:
CPF_2129
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF08305.
  
     0.758
lacZ
Beta-galactosidase; Identified by similarity to SP:Q56307; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929; match to protein family HMM PF08305; match to protein family HMM TIGR01167.
 
   
 0.638
lacZ-2
Beta-galactosidase; Identified by similarity to SP:P26257; match to protein family HMM PF00404; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF07532; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.632
CPF_1311
Identified by match to protein family HMM PF03372.
  
     0.610
CPF_1614
Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.
 
  
 0.606
CPF_0859
Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF05089; match to protein family HMM PF07554.
  
     0.585
CPF_1473
Conserved hypothetical protein.
 
   
 0.583
CPF_0766
Beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
   
 0.557
CPF_0651
Hypothetical protein; Identified by glimmer; putative.
       0.556
CPF_0428
Conserved hypothetical protein; Identified by similarity to PIR:AG1527; match to protein family HMM PF06824.
 
   
 0.523
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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