Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0697Oxidoreductase, FAD/FMN-binding; Identified by similarity to SP:P32382; match to protein family HMM PF00724. (368 aa)    
Predicted Functional Partners:
CPF_0308
Electron transfer flavoprotein, beta subunit/FixA family protein; Identified by match to protein family HMM PF01012.
  
 
 0.625
CPF_2583
Electron transfer flavoprotein, beta subunit/FixA family protein; Identified by match to protein family HMM PF01012.
  
 
 0.625
CPF_0252
Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559.
   
    0.537
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.523
CPF_2405
Identified by match to protein family HMM PF00575.
   
  
 0.513
CPF_0696
Putative transcriptional regulator; Identified by match to protein family HMM PF01638.
     
 0.488
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.468
tuf-2
Translation elongation factor Tu; Identified by similarity to SP:P33166; match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485.
   
  
 0.468
CPF_0309
Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
   
 
 0.460
CPF_2582
Electron transfer flavoprotein, alpha subunit/FixB family protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.
   
 
 0.460
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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