Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0715Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (334 aa)    
Predicted Functional Partners:
galE-2
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.661
CPF_0714
DHHA1 domain protein; Identified by match to protein family HMM PF02272; match to protein family HMM PF07973.
 
   
 0.659
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.620
CPF_0910
Capsular polysaccharide biosynthesis protein; Identified by similarity to SP:P39853; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
 0.541
CPF_0263
ABC-2 type transporter, permease protein; Identified by match to protein family HMM PF01061.
  
  
 0.509
CPF_0595
Bacterial sugar transferase family protein; Identified by similarity to GB:AAD22526.1; match to protein family HMM PF02397.
 
  
 0.478
CPF_0234
Putative membrane protein.
  
  
 0.476
CPF_0426
Identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573.
     
 0.474
CPF_0466
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02397.
 
  
 0.459
CPF_0912
Bacterial sugar transferase family protein; Identified by similarity to GB:AAG17415.1; match to protein family HMM PF02397.
 
  
 0.459
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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