STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
splBSpore photoproduct lyase; Identified by similarity to SP:P37956; match to protein family HMM PF04055; match to protein family HMM TIGR00620. (340 aa)    
Predicted Functional Partners:
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.577
cotJC
Spore coat protein CotJC; Identified by similarity to SP:Q45538; match to protein family HMM PF05067.
  
     0.564
cotJB
Spore coat protein CotJB; Identified by similarity to SP:Q45537.
  
     0.541
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
     
 0.443
CPF_0719
HAD hydrolase, IIB family; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.
       0.442
ytaF
Putative sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.433
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
     
 0.430
uvdE
UV damage endonuclease UvdE; Identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629.
 
   
 0.424
CPF_1841
Hypothetical protein; Identified by glimmer; putative.
  
     0.422
yyaC
Putative sporulation protein YyaC; Identified by similarity to PIR:E97251; match to protein family HMM PF06866; match to protein family HMM TIGR02841.
  
   
 0.414
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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