STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0735Putative fibronectin-binding protein; Identified by similarity to GB:CAC69846.1; match to protein family HMM PF07299. (220 aa)    
Predicted Functional Partners:
CPF_1899
Conserved hypothetical protein; Identified by similarity to PIR:G97025.
  
     0.649
CPF_1786
Conserved hypothetical protein; Identified by similarity to PIR:B96903.
  
     0.641
CPF_1861
Conserved hypothetical protein; Identified by similarity to PIR:B96903.
  
     0.630
CPF_2982
Translocator protein, LysE family; Identified by match to protein family HMM PF01810.
 
     0.549
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
     0.543
CPF_1157
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.464
CPF_1933
PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888.
  
     0.439
CPF_0815
Glycosyl hydrolase, family 85; Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF03644.
  
     0.422
CPF_2359
Helicase domain protein; Identified by match to protein family HMM PF00271.
  
     0.420
CPF_0234
Putative membrane protein.
  
   
 0.409
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.