Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_0738Putative transcriptional regulator; Identified by match to protein family HMM PF01638. (110 aa)    
Predicted Functional Partners:
CPF_1136
Transcriptional regulator; Identified by match to protein family HMM PF01638.
  
     0.773
CPF_0739
Putative cytochrome C-type biogenesis protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534.
  
  
 0.762
CPF_0291
PemK family protein; Toxic component of a type II toxin-antitoxin (TA) system.
   
    0.475
trx
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
  
    0.412
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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