Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0746ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (1132 aa)    
Predicted Functional Partners:
CPF_0745
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.997
CPF_0841
ABC transporter, ATP-binding protein; Identified by similarity to SP:O34697; match to protein family HMM PF00005.
 
 
 0.961
CPF_0118
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.960
CPF_1199
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.955
CPF_1792
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.955
CPF_1793
Conserved hypothetical protein.
  
 
 0.919
CPF_0289
Conserved hypothetical protein; Identified by similarity to PIR:D96960.
   
 
 0.736
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.585
CPF_0744
Conserved hypothetical protein; Identified by similarity to GB:BAC12302.1; match to protein family HMM PF00440.
 
  
 0.556
CPF_2801
S4 domain protein; Identified by match to protein family HMM PF01479.
  
    0.537
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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