STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0771Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167. (549 aa)    
Predicted Functional Partners:
CPF_0772
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.894
CPF_0773
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.894
CPF_0124
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.780
CPF_0148
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.780
CPF_0123
Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.
  
     0.764
CPF_0212
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.738
CPF_0774
Von Willebrand factor type A/Cna B-type domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF05738.
 
     0.718
CPF_2615
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.697
CPF_0146
Cell wall surface anchor family protein; Identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167.
  
     0.476
CPF_0763
Conserved hypothetical protein; Identified by similarity to SP:P37501.
  
     0.465
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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