Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0775Conserved hypothetical protein; Identified by similarity to GB:AAK05345.1; match to protein family HMM PF05043. (485 aa)    
Predicted Functional Partners:
fruA
PTS system, fructose-specific, IIABC component; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
  
 0.652
CPF_0422
PTS system, IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003.
 
 
 0.520
CPF_0123
Cell wall surface anchor family protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.
  
     0.456
CPF_2490
Putative lipoprotein; Identified by similarity to SP:P16055; match to protein family HMM PF04205.
  
     0.436
CPF_0776
Conserved hypothetical protein; Identified by similarity to GB:AAO36389.1; match to protein family HMM PF01814; match to protein family HMM PF04282.
  
    0.413
gshAB
Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
  
     0.413
CPF_0774
Von Willebrand factor type A/Cna B-type domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF05738.
       0.406
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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