CPF_0780 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_0780

Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970. (248 aa)

Predicted Functional Partners:

vhb

0.978

hcp

0.605

CPF_0781

0.485

nifJ

0.469

CPF_1269

0.422

CPF_0785

0.420

ribA

0.407

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0780	CPF_0781	CPF_0780	CPF_0781	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.	0.485
CPF_0780	CPF_0785	CPF_0780	CPF_0785	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03143.	0.420
CPF_0780	CPF_1269	CPF_0780	CPF_1269	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	0.422
CPF_0780	hcp	CPF_0780	CPF_2909	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.605
CPF_0780	nifJ	CPF_0780	CPF_2318	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.469
CPF_0780	ribA	CPF_0780	CPF_0548	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.407
CPF_0780	vhb	CPF_0780	CPF_2209	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	Bacterial hemoglobin; Identified by similarity to SP:P04252; match to protein family HMM PF00042; Belongs to the globin family.	0.978
CPF_0781	CPF_0780	CPF_0781	CPF_0780	Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	0.485
CPF_0785	CPF_0780	CPF_0785	CPF_0780	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03143.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	0.420
CPF_0785	CPF_1269	CPF_0785	CPF_1269	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03143.	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	0.638
CPF_0785	nifJ	CPF_0785	CPF_2318	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03143.	Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.561
CPF_0785	vhb	CPF_0785	CPF_2209	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03143.	Bacterial hemoglobin; Identified by similarity to SP:P04252; match to protein family HMM PF00042; Belongs to the globin family.	0.423
CPF_1269	CPF_0780	CPF_1269	CPF_0780	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	0.422
CPF_1269	CPF_0785	CPF_1269	CPF_0785	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03143.	0.638
CPF_1269	hcp	CPF_1269	CPF_2909	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.754
CPF_1269	nifJ	CPF_1269	CPF_2318	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.534
CPF_1269	vhb	CPF_1269	CPF_2209	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	Bacterial hemoglobin; Identified by similarity to SP:P04252; match to protein family HMM PF00042; Belongs to the globin family.	0.526
hcp	CPF_0780	CPF_2909	CPF_0780	Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.	0.605
hcp	CPF_1269	CPF_2909	CPF_1269	Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	Rubredoxin/flavodoxin/oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.	0.754
hcp	nifJ	CPF_2909	CPF_2318	Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.680

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About