STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0798Conserved domain protein; Identified by similarity to GB:AAS08237.1. (175 aa)    
Predicted Functional Partners:
CPF_1786
Conserved hypothetical protein; Identified by similarity to PIR:B96903.
  
     0.651
CPF_1861
Conserved hypothetical protein; Identified by similarity to PIR:B96903.
  
     0.600
CPF_1712
Hypothetical protein; Identified by glimmer; putative.
  
     0.561
CPF_1189
Pentapeptide repeat protein; Identified by match to protein family HMM PF00805.
  
     0.552
CPF_1877
Putative membrane protein.
  
     0.478
CPF_0390
Hypothetical protein; Identified by glimmer; putative.
  
     0.456
CPF_0409
Conserved hypothetical protein; Identified by similarity to GB:AAO80898.1.
  
     0.436
CPF_0235
Putative membrane protein.
  
     0.433
CPF_0815
Glycosyl hydrolase, family 85; Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF03644.
  
     0.433
CPF_2336
Putative membrane protein.
  
     0.430
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.