STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0800Conserved hypothetical protein; Identified by similarity to GB:AAT29428.1; match to protein family HMM PF01863. (237 aa)    
Predicted Functional Partners:
hsdR
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   
 0.740
hsdS
Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.
 
    0.713
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497.
 
     0.710
CPF_0799
Hypothetical protein; Identified by glimmer; putative.
       0.495
CPF_0801
Sensory box protein/histidinol phosphate phosphatase family protein; Identified by similarity to SP:O34411; match to protein family HMM PF00990; match to protein family HMM PF02811; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR01856.
       0.477
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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