STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0807Iron compound ABC transporter, iron compound-binding protein; Identified by match to protein family HMM PF01497. (314 aa)    
Predicted Functional Partners:
CPF_0808
Putative ferrichrome ABC transporter, permease protein FhuB; Identified by similarity to SP:P49936; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.957
CPF_0809
Putative ferrichrome ABC transporter, permease protein FhuG; Identified by similarity to SP:P49937; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.956
CPF_0810
Putative ferrichrome ABC transporter, ATP-binding protein; Identified by similarity to SP:P49938; match to protein family HMM PF00005.
 
 
 0.940
CPF_0215
Iron chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.833
CPF_1298
Iron chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.770
CPF_0214
Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.737
CPF_1297
Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.733
CPF_1424
iron(III) ABC transporter, ATP-binding protein; Identified by similarity to SP:P49938; match to protein family HMM PF00005.
 
 
 0.726
CPF_1425
iron(III) ABC transporter, permease protein; Identified by similarity to SP:Q56992; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.706
CPF_0107
Conserved hypothetical protein; Identified by similarity to GB:CAC39225.1.
  
 
 0.621
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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