Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0875Putative O-GlcNAcase nagJ; Identified by similarity to SP:Q0TR53; match to protein family HMM PF00754; match to protein family HMM PF02838; match to protein family HMM PF07555; match to protein family HMM TIGR01167. (1296 aa)    
Predicted Functional Partners:
CPF_1614
Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.
  
     0.760
CPF_0859
Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF05089; match to protein family HMM PF07554.
  
     0.741
nanJ
Sialidase; Identified by similarity to SP:P29767; similarity to PDB:2V73_B; match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF02012; match to protein family HMM PF02973.
 
 
 0.722
nagE
PTS system, N-acetylglucosamine-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998.
 
    0.709
CPF_1070
PTS system, N-acetylglucosamine-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998.
 
    0.708
nanI
Sialidase; Identified by similarity to SP:Q54727; similarity to PDB:2BF6_A; match to protein family HMM PF02012; match to protein family HMM PF02973.
 
 
 0.680
CPF_0422
PTS system, IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003.
  
    0.663
treB
PTS system, trehalose-specific IIBC component; Identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992.
  
    0.663
CPF_1785
PTS system, sucrose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996.
  
    0.663
ptsG
PTS system, glucose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002.
  
    0.663
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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