STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0885Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465. (376 aa)    
Predicted Functional Partners:
CPF_0895
Ethanolamine utilization protein; Identified by similarity to GB:AAO36662.1; match to protein family HMM PF00171; match to protein family HMM TIGR02518.
 
 0.974
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.659
CPF_0884
Identified by match to protein family HMM PF09335.
  
    0.488
eutP
Ethanolamine utilization protein, EutP; Identified by similarity to GB:AAN81436.1; match to protein family HMM TIGR02528; Belongs to the EutP/PduV family.
  
  
 0.445
eutS
Ethanolamine utilization protein EutS; Identified by match to protein family HMM PF00936.
     
 0.425
CPF_2610
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
 
 0.404
CPF_0888
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861.
       0.401
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.