STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0909NADPH-dependent FMN reductase; Identified by match to protein family HMM PF03358. (206 aa)    
Predicted Functional Partners:
CPF_1135
Identified by match to protein family HMM PF00037; match to protein family HMM PF00881.
 
  
 0.586
CPF_1873
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.576
CPF_0908
EAL domain protein; Identified by match to protein family HMM PF00563.
  
  
 0.568
CPF_2479
lysM domain protein; Identified by match to protein family HMM PF01476.
   
  
 0.522
prkA
Serine protein kinase; Identified by similarity to PIR:JC4602; match to protein family HMM PF06798; match to protein family HMM PF08298.
   
    0.495
CPF_0910
Capsular polysaccharide biosynthesis protein; Identified by similarity to SP:P39853; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
       0.423
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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