Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0926Site-specific recombinase, phage integrase family; Identified by similarity to GB:AAF12706.1; match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (354 aa)    
Predicted Functional Partners:
CPF_1020
Conserved hypothetical protein; Identified by similarity to SP:P10426; match to protein family HMM PF06114.
  
  
 0.632
CPF_1366
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.
  
  
 0.606
CPF_0927
Conserved hypothetical protein; Identified by similarity to GB:AAL96793.1; match to protein family HMM PF06114.
  
    0.584
CPF_0928
Transcriptional regulator, Cro/CI family; Identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381.
  
  
 0.557
CPF_0930
BRO domain protein; Identified by match to protein family HMM PF02498.
 
  
 0.538
CPF_2431
comF protein, homolog.
   
    0.525
ftsK
DNA translocase FtsK; Identified by similarity to SP:P21458; match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.494
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.481
CPF_0925
Putative membrane protein; Identified by similarity to GB:AAS39698.1.
     
 0.477
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.429
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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