STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0928Transcriptional regulator, Cro/CI family; Identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381. (167 aa)    
Predicted Functional Partners:
CPF_0927
Conserved hypothetical protein; Identified by similarity to GB:AAL96793.1; match to protein family HMM PF06114.
 
  
 0.815
CPF_0930
BRO domain protein; Identified by match to protein family HMM PF02498.
 
     0.615
CPF_0926
Site-specific recombinase, phage integrase family; Identified by similarity to GB:AAF12706.1; match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
  
  
 0.558
CPF_0929
Conserved hypothetical protein; Identified by similarity to GB:AAD44066.1.
  
  
 0.536
CPF_2368
CspC family protein; Identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082.
  
    0.501
CPF_2369
CspA family protein; Identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082.
  
    0.498
sleC
Spore cortex-lytic enzyme SleC; Identified by similarity to PIR:I40824; match to protein family HMM PF01471.
  
     0.496
CPF_0932
Conserved domain protein; Identified by similarity to GB:AAN36269.1.
       0.460
cspA
Serine protease A; Identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082.
  
    0.449
cspC
Serine protease C; Identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082.
  
     0.421
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.