Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPF_0948Phage terminase, small subunit; Identified by similarity to GB:CAA47711.1; match to protein family HMM PF03592. (155 aa)    
Predicted Functional Partners:
CPF_0949
Putative phage terminase, large subunit.
 
  
 0.939
CPF_0952
Putative phage minor capsid protein.
 
   
 0.834
CPF_0950
Hypothetical protein; Identified by glimmer; putative.
       0.741
CPF_0966
Conserved hypothetical protein; Identified by similarity to GB:AAK27910.2.
 
     0.652
CPF_0956
Putative phage major capsid protein; Identified by similarity to GB:AAA56848.1.
 
  
 0.651
CPF_0951
Putative phage minor capsid protein.
       0.630
CPF_0947
Conserved domain protein; Identified by similarity to GB:AAK03168.1.
       0.574
CPF_0953
Hypothetical protein; Identified by glimmer; putative.
       0.569
CPF_0965
Putative membrane protein; Identified by similarity to GB:AAL96783.1.
 
   
 0.501
CPF_0954
Conserved hypothetical protein; Identified by similarity to GB:AAN67551.1.
       0.485
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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