Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0955Conserved hypothetical protein; Identified by similarity to GB:BAC63730.1. (201 aa)    
Predicted Functional Partners:
CPF_0956
Putative phage major capsid protein; Identified by similarity to GB:AAA56848.1.
       0.712
CPF_0957
Hypothetical protein; Identified by glimmer; putative.
       0.670
CPF_0960
Hypothetical protein; Identified by glimmer; putative.
       0.590
CPF_0958
Conserved hypothetical protein; Identified by similarity to GB:CAB53794.1.
       0.589
CPF_0959
Hypothetical protein; Identified by glimmer; putative.
       0.587
CPF_0961
Hypothetical protein; Identified by glimmer; putative.
       0.587
CPF_0962
Conserved domain protein; Identified by similarity to PIR:AD1730.
       0.584
CPF_0963
Hypothetical protein; Identified by glimmer; putative.
       0.549
CPF_0954
Conserved hypothetical protein; Identified by similarity to GB:AAN67551.1.
       0.533
CPF_0952
Putative phage minor capsid protein.
       0.496
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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