STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_0965Putative membrane protein; Identified by similarity to GB:AAL96783.1. (1070 aa)    
Predicted Functional Partners:
CPF_0966
Conserved hypothetical protein; Identified by similarity to GB:AAK27910.2.
 
     0.947
CPF_0969
KID repeat family protein.
 
     0.776
CPF_0971
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
 
    0.714
CPF_0967
Conserved hypothetical protein; Identified by similarity to PIR:B97132.
       0.701
CPF_0952
Putative phage minor capsid protein.
 
  
 0.685
CPF_0964
Hypothetical protein; Identified by glimmer; putative.
       0.660
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.645
CPF_0956
Putative phage major capsid protein; Identified by similarity to GB:AAA56848.1.
 
  
 0.636
CPF_0949
Putative phage terminase, large subunit.
 
   
 0.586
CPF_1574
Putative phage structural protein; Identified by match to protein family HMM PF01551; match to protein family HMM TIGR01665.
  
  
 0.562
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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